PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000532986
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 323aa    MW: 35053.7 Da    PI: 9.3077
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000532986genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.2e-3251106357
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH r++
  MDP0000532986  51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHCRDQ 106
                    689******************************9******************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.9E-2752106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.2E-2954105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2254102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.99754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-28193262IPR009057Homeodomain-like
SuperFamilySSF466897.68E-17197262IPR009057Homeodomain-like
TIGRFAMsTIGR015656.7E-27201257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDFTTVTATI QTPDTDTEPP SPTDPKFNFF SGRSLSFTSG AFQPQPKRTR VVAYKECLKN  60
HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHCRDQYRPK NNVIRNRLLP  120
APKTAHNNHS SSSSPSSSPN PTLSPQSPPP VSHLPPSYFA APPQMLLALS SGFSGPPDEH  180
PHQHQLNPTA VMKTEKYPGE KKRSRTKFSQ EQKEKMSSFA EKVGWRVQKS DERSVEDFCS  240
EVGIGRGVFK VWMHNNKHGL RRRLERSAGV GGGGNMIINS NVSEINGEGE RXGFDSMNAH  300
IADNNVNANP LHLSNNGSSS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-212022581874ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232920.0bud| cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339904.10.0PREDICTED: zinc-finger homeodomain protein 11-like
RefseqXP_008368241.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ19e-66ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ801e-128M5XJ80_PRUPE; Uncharacterized protein
STRINGscaffold_201819.11e-63(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-61zinc finger homeodomain 1